rs58920878 chr18:48923195 C>G
- Sequence
ccacgtcggtcagggccttgccct[C/G]gctccctgcagccccagctcctcc
- ASB in cell types
- HEK293 (embryonic kidney) BEAS-2B (bronchial epithelium) K562 (myelogenous leukemia) MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- GCR_HUMAN HDAC1_HUMAN NFIC_HUMAN GLIS1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.39 | -0.25 | 1.10 | n/a | No Hit | |||
| HDAC1_HUMAN | -0.88 | 1.72 | 1.00 | n/a | n/a | |||
| NFIC_HUMAN | -1.75 | 2.14 | 1.00 | 4.85 | Concordant | |||
| GLIS1_HUMAN | n/a | 1.72 | 2.00 | 0.86 | Weak Concordant |
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Motif analysis
