rs58940222 chr7:12660709 A>G
- Sequence
tccgttggtggaaagtcaattgcg[A/G]ggacgcctgctttggctgctcacc
- ASB in cell types
- MDA-MB-231 (breast adenocarcinoma) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line)
- ASB for transcription factors
- JUN_HUMAN BRD4_HUMAN CDN1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 2.20 | -0.52 | 1.88 | -1.29 | Weak Concordant | |||
| BRD4_HUMAN | 2.02 | -0.75 | 1.80 | n/a | n/a | |||
| CDN1B_HUMAN | 1.55 | -0.41 | 2.00 | n/a | n/a |
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Motif analysis
