rs58952718 chr8:41543078 G>T
- Sequence
tttagcctttctgctgcgaagatt[G/T]taaatagattaaagaaaacagctg
- ASB in cell types
- GM02630 (Fanconi anemi) breast tumour metastasis 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN ESR1_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.68 | -5.07 | 2.00 | -1.05 | Weak Concordant | |||
| ESR1_HUMAN | 2.89 | -5.22 | 2.00 | n/a | No Hit | |||
| STAG1_HUMAN | 0.94 | 0.19 | 1.06 | n/a | n/a |
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Motif analysis
