rs59110119 chr17:39451315 G>C
- Sequence
ctgccagagagaggaagaggacag[G/C]gcatcgaaatctcgcgaatattgg
- ASB in cell types
- CD14+ monocytes breast tumor K562 (myelogenous leukemia) MDM(monocyte derived macrophages)
- ASB for transcription factors
- STAT1_HUMAN CTCF_HUMAN ESR1_HUMAN SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.52 | 0.01 | 1.75 | 1.53 | Weak Discordant | |||
| CTCF_HUMAN | 0.12 | 1.35 | 1.12 | n/a | No Hit | |||
| ESR1_HUMAN | 2.96 | 0.19 | 1.67 | -3.24 | Concordant | |||
| SPI1_HUMAN | 1.19 | 0.34 | 1.28 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Colon_Transverse, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Thyroid