rs5912225 chrX:79144441 G>T

Sequence
caagcaactcgagggctcctagct[G/T]cagcaaaggactccataggcaaat
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF1_HUMAN RELB_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN n/a 2.48 1.005.9·10-4 3.00 n/a n/a
RELB_HUMAN -1.86 2.66 1.000.05 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP graves disease
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Nerve_Tibial,  Stomach,  Testis,  Thyroid,  Whole_Blood

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