rs59134881 chr3:25661909 T>C
- Sequence
gggctaattctatttttatttctt[T/C]ctgttaccacaagcaggtggcaac
- ASB in cell types
- neural cell GM19099 (female B-cells Lymphoblastoid Cell Lines) GM12891 (male B- cells lymphoblastoid cell line) GM18526 (B – cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN ZN654_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.07 | 1.65 | 1.40 | n/a | No Hit | |||
| STAG1_HUMAN | -0.01 | 1.77 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | -0.46 | 2.19 | 1.50 | n/a | n/a | |||
| ZN654_HUMAN | -2.45 | 2.39 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cortex, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Heart_Left_Ventricle, Nerve_Tibial, Thyroid, Whole_Blood