rs59151473 chr8:143541682 G>C
- Sequence
gggaagggactgcttgggctctgg[G/C]aggccgcgcgggcccagcttgtgc
- ASB in cell types
- 22RV1 (prostate carcinoma) MDA-MB-231 (breast adenocarcinoma) fetal bone marrow-derived mononuclear cells HeLa (cervical adenocarcinoma)
- ASB for transcription factors
- ANDR_HUMAN BRD4_HUMAN INT11_HUMAN RBBP5_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.96 | n/a | 2.00 | n/a | No Hit | |||
| BRD4_HUMAN | -0.09 | 1.52 | 2.00 | n/a | n/a | |||
| INT11_HUMAN | -0.33 | 1.30 | 3.60 | n/a | n/a | |||
| RBBP5_HUMAN | 2.32 | -4.55 | 2.00 | n/a | n/a | |||
| KMT2A_HUMAN | -0.43 | 2.69 | 1.75 | -1.92 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood