rs59151663 chr12:54217272 C>A
- Sequence
aaaaaaaaaaagcgggaaaaaaaa[C/A]aagccagagccgggagatgacagc
- ASB in cell types
- K562 (myelogenous leukemia) CTV-1 (Adult T acute lymphoblastic leukemia) TTC-1240 (Rhabdoid tumor of the kidney) NB69 (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN SMCA4_HUMAN REST_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.26 | 0.42 | 1.32 | n/a | No Hit | |||
| SMCA4_HUMAN | 1.21 | 0.18 | 1.18 | n/a | n/a | |||
| REST_HUMAN | 1.85 | n/a | 2.00 | n/a | No Hit | |||
| GCR_HUMAN | 1.56 | -0.53 | 1.17 | n/a | No Hit | |||
| FLI1_HUMAN | 1.78 | -1.20 | 1.00 | 0.38 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid