rs59181776 chr19:893271 A>G
- Sequence
cgcctccggggctatttgcatacg[A/G]ccatttccagtaattcccagcagc
- ASB in cell types
- 22RV1 (prostate carcinoma) CD14+ monocytes breast tumor HCT-116 (colon carcinoma)
- ASB for transcription factors
- ANDR_HUMAN STAT1_HUMAN TF65_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 3.24 | n/a | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 3.09 | n/a | 2.00 | 0.25 | Weak Discordant | |||
| TF65_HUMAN | 2.52 | n/a | 2.50 | 3.37 | Discordant | |||
| ESR1_HUMAN | 2.90 | 0.53 | 1.60 | n/a | No Hit | |||
| PO2F1_HUMAN | -0.29 | 1.63 | 1.50 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
