rs59211453 chr2:85300463 G>T
- Sequence
gaagacagtactttttaaattcat[G/T]atgcaacatccagtgagcccacca
- ASB in cell types
- A549 (lung carcinoma) adult erythroblasts macrophages TMD8 (diffuse large B-cell lymphoma)
- ASB for transcription factors
- KDM6A_HUMAN CEBPB_HUMAN ITF2_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KDM6A_HUMAN | 2.12 | n/a | 2.50 | n/a | n/a | |||
| CEBPB_HUMAN | 1.55 | -0.17 | 1.73 | 2.84 | Discordant | |||
| ITF2_HUMAN | 2.37 | -4.83 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.77 | 0.46 | 1.37 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Skin_Sun_Exposed_Lower_leg, Whole_Blood