rs5925917 chrX:23756103 C>T
- Sequence
actgtatgaggtcagtattaccat[C/T]ttatagataaggaaattgtggttt
- ASB in cell types
- GM12890 (Lymphoblastoid Cell Lines) GM12878 (female B-cells lymphoblastoid cell line) GM12892 (female B-cells lymphoblastoid cell line) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 1.50 | 0.02 | 1.75 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Coronary, Artery_Tibial, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Heart_Atrial_Appendage, Lung, Skin_Sun_Exposed_Lower_leg, Spleen, Whole_Blood