rs592866 chr10:6163959 A>T
- Sequence
gtttccggcaaaggatgttttccg[A/T]gaaggcctgggagcggctgtaaat
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) K562 (myelogenous leukemia) keratinocytes CD14+ monocytes
- ASB for transcription factors
- SNAI2_HUMAN FLI1_HUMAN ETS1_HUMAN GABP1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | n/a | 1.58 | 5.20 | n/a | No Hit | |||
| FLI1_HUMAN | 1.83 | -0.95 | 1.00 | n/a | No Hit | |||
| ETS1_HUMAN | 1.63 | -1.31 | 1.00 | n/a | No Hit | |||
| GABP1_HUMAN | 1.08 | n/a | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | 0.23 | 1.94 | 2.00 | -2.76 | Discordant |
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Motif analysis
