rs59299306 chr6:138773501 A>G
- Sequence
ctgggaattgtagttcgggggggg[A/G]atctaacactcaccgaggggcgga
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) BEAS-2B (bronchial epithelium) renal cortex
- ASB for transcription factors
- ELF1_HUMAN CREB1_HUMAN GCR_HUMAN GABPA_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | 1.86 | 0.11 | 1.38 | n/a | No Hit | |||
| CREB1_HUMAN | 3.01 | -2.81 | 1.00 | n/a | No Hit | |||
| GCR_HUMAN | 1.65 | -0.25 | 1.00 | n/a | No Hit | |||
| GABPA_HUMAN | 1.38 | -0.58 | 1.42 | n/a | No Hit | |||
| HCFC1_HUMAN | 2.96 | -5.04 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid