rs59305069 chr19:12293997 A>G
- Sequence
gtgccctcagccccgctgcttcac[A/G]ggaagccgcctccctgagagtcag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) LNCaP (prostate carcinoma) SEM (childhood B acute lymphoblastic leukemia) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- TBP_HUMAN ELF1_HUMAN ERG_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBP_HUMAN | 3.02 | -3.37 | 1.33 | n/a | No Hit | |||
| ELF1_HUMAN | 3.93 | -3.60 | 1.00 | -1.96 | Weak Concordant | |||
| ERG_HUMAN | 3.42 | n/a | 1.33 | -2.67 | Concordant | |||
| IKZF2_HUMAN | 2.54 | -1.79 | 1.00 | n/a | n/a | |||
| GATA3_HUMAN | 1.73 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Lung, Skin_Sun_Exposed_Lower_leg, Whole_Blood