rs59312515 chr12:133130498 G>A
- Sequence
gccaggctggggcgcgtgcgtaac[G/A]gtgtgtgttgtgggtgcgtgtgcg
- ASB in cell types
- primary B-CLL cells CD14+ monocytes iPS-derived chondrocytes
- ASB for transcription factors
- STAT1_HUMAN ATF2_HUMAN BRD4_HUMAN SKI_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.48 | -4.97 | 2.00 | n/a | No Hit | |||
| ATF2_HUMAN | -1.18 | 1.72 | 2.00 | n/a | No Hit | |||
| BRD4_HUMAN | 2.22 | 0.39 | 1.33 | n/a | n/a | |||
| SKI_HUMAN | -2.24 | 2.50 | 1.00 | n/a | n/a | |||
| TYY1_HUMAN | 2.30 | n/a | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood