rs59345679 chr19:28727772 G>A
- Sequence
ccaagcgccccctcccggcaggcg[G/A]accgctgctctcgctcaagttctg
- ASB in cell types
- Kelly (neuroblastoma) K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) PANC1 (pancreatic ductal adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN CTCFL_HUMAN MYCN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.41 | -0.27 | 3.00 | -2.56 | Concordant | |||
| CTCFL_HUMAN | 2.33 | -1.09 | 3.00 | -3.57 | Concordant | |||
| MYCN_HUMAN | 2.35 | -1.83 | 1.00 | n/a | No Hit |
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Motif analysis
