rs59435090 chr2:105787906 C>T
- Sequence
gaaacacatgcgtataccgccccc[C/T]accgcccccgacttgtagatccct
- ASB in cell types
- LNCaP (prostate carcinoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- CTCF_HUMAN CTBP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.95 | 2.17 | 2.40 | 3.55 | Concordant | |||
| CTBP1_HUMAN | n/a | 2.82 | 2.00 | n/a | n/a |
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Motif analysis
