rs59438000 chr17:39637302 G>C

Sequence
tcttccgccggtcgaacccgcttc[G/C]ccgcccgctgtccgtgctgggttc
ASB in cell types
ER+ breast tumor BEAS-2B (bronchial epithelium)
ASB for transcription factors
ESR1_HUMAN GCR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 2.67 -4.62 1.3·10-31.00 1.50 n/a No Hit
GCR_HUMAN 0.33 0.89 0.900.05 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Visceral_Omentum,  Artery_Aorta,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Nerve_Tibial,  Whole_Blood

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