rs59502684 chr22:37636704 T>C
- Sequence
cgagggatactacaaacaggcaat[T/C]tgtcaaagtgtctaaaatgggatg
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line) MOLM14 (Adult acute myeloid leukemia) GM19099 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN CDK8_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.54 | 0.43 | 1.40 | n/a | No Hit | |||
| CDK8_HUMAN | 3.19 | n/a | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Pancreas, Whole_Blood