rs59505200 chr3:171748060 G>A
- Sequence
tgttagaaaaacaacatattctaa[G/A]tgacatcacccagaagacaaaaac
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- ATF2_HUMAN PRDM6_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF2_HUMAN | -2.84 | 2.74 | 1.00 | 2.24 | Concordant | |||
| PRDM6_HUMAN | -1.98 | 2.78 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Lung, Muscle_Skeletal, Nerve_Tibial, Spleen, Thyroid