rs59513960 chr2:231614263 G>A
- Sequence
tccgcgaggcgcgctccggggcgg[G/A]ggccgagagcagccccgcccgggc
- ASB in cell types
- neural cell pancreas HCT-116 (colon carcinoma) CD34+ hematopoietic stem cells
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.05 | 2.17 | 1.33 | n/a | n/a | |||
| CTCF_HUMAN | 0.47 | 1.00 | 1.15 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Testis