rs596074 chr1:234314241 T>G
- Sequence
cctcaacagaccaaaaggtcaatg[T/G]ccaaccgtgctctcatttcctacc
- ASB in cell types
- HepG2 (hepatoblastoma) liver
- ASB for transcription factors
- HNF4A_HUMAN FOXK2_HUMAN SP1_HUMAN RXRA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HNF4A_HUMAN | 3.54 | -1.23 | 1.00 | -1.74 | Weak Concordant | |||
| FOXK2_HUMAN | 3.46 | -3.45 | 1.00 | n/a | No Hit | |||
| SP1_HUMAN | 3.04 | -3.31 | 1.00 | n/a | No Hit | |||
| RXRA_HUMAN | 3.08 | 0.11 | 1.00 | 2.64 | Discordant | |||
| FOXA2_HUMAN | 1.74 | -0.35 | 1.11 | n/a | No Hit |
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Motif analysis
