rs59638227 chr17:82098190 A>G
- Sequence
ggagcgcggcggagcgggaggctg[A/G]agcgcggcggagagggaggccggg
- ASB in cell types
- HepG2 (hepatoblastoma) foreskin keratinocyte MOLT-4 (Adult T acute lymphoblastic leukemia) WA09 (embryonic stem cells)
- ASB for transcription factors
- TP53B_HUMAN NELFA_HUMAN HNF4A_HUMAN TYY1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TP53B_HUMAN | 0.08 | 2.29 | 1.00 | n/a | n/a | |||
| NELFA_HUMAN | -2.26 | 0.79 | 1.50 | n/a | n/a | |||
| HNF4A_HUMAN | -1.94 | 2.72 | 2.00 | n/a | No Hit | |||
| TYY1_HUMAN | 2.10 | 0.49 | 1.93 | n/a | No Hit | |||
| GCR_HUMAN | 0.69 | 0.35 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood