rs59650024 chr17:77741311 G>A
- Sequence
caccaaagcacagcgcccccaggt[G/A]agcactcacccaaactgcaggcaa
- ASB in cell types
- LNCaP (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line) LNCaP C4-2B (prostate carcinoma) GM19099 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.33 | -0.52 | 2.07 | -4.43 | Concordant |
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Motif analysis
