rs59686903 chr17:83051746 C>T
- Sequence
cccgctggcacctaccacgtgggc[C/T]tgcatggcctggctctcctcggac
- ASB in cell types
- breast tumor CD14+ monocytes 22RV1 (prostate carcinoma) GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- STAT1_HUMAN ESR1_HUMAN MYCN_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 3.21 | n/a | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.92 | -0.53 | 2.00 | -2.37 | Concordant | |||
| MYCN_HUMAN | 1.22 | 0.68 | 1.61 | n/a | No Hit | |||
| ANDR_HUMAN | 2.41 | -3.51 | 2.00 | n/a | No Hit | |||
| MAX_HUMAN | 1.46 | 0.39 | 1.61 | 0.00 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid