rs59704939 chr3:30518303 T>A
- Sequence
ttcacagccacatggtggacccag[T/A]gctgaagggagattaacactgcag
- ASB in cell types
- HUVEC-C (HUVEC, umbilical vein endothelial cells) adrenal gland 22RV1 (prostate carcinoma) MCF10AT1 (breast premetastatic epithelial cells)
- ASB for transcription factors
- CTCF_HUMAN NOTC1_HUMAN TF65_HUMAN SUH_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.60 | 1.17 | 1.04 | 0.15 | Weak Concordant | |||
| NOTC1_HUMAN | 2.18 | n/a | 2.00 | n/a | n/a | |||
| TF65_HUMAN | 2.47 | -0.90 | 2.00 | n/a | No Hit | |||
| SUH_HUMAN | 2.33 | n/a | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 1.72 | -0.11 | 1.50 | -0.41 | Weak Concordant |
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Motif analysis
