rs59727886 chr2:88265800 A>G
- Sequence
ggatgagtcacagatgaatgagtc[A/G]ctttctgttttgttgaaggtcata
- ASB in cell types
- TTC-1240 (Rhabdoid tumor of the kidney) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CREB1_HUMAN SMCA4_HUMAN SMRC1_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 2.96 | -2.67 | 1.00 | n/a | No Hit | |||
| SMCA4_HUMAN | 1.97 | -0.25 | 1.08 | n/a | n/a | |||
| SMRC1_HUMAN | 2.20 | -0.22 | 1.10 | n/a | n/a | |||
| JUN_HUMAN | 2.63 | -2.67 | 1.00 | -5.09 | Concordant | |||
| FOS_HUMAN | 0.85 | n/a | 4.00 | -6.18 | Concordant |
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Motif analysis
