rs59766044 chr1:39817036 C>T

Sequence
ttgaacgggacccacgttttcctg[C/T]gcttcccttagccttggctgtggt
ASB in cell types
THP-1 (acute monocytic leukemia) HEK293 (embryonic kidney) spleen
ASB for transcription factors
CTCF_HUMAN RAD21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.95 0.47 9.4·10-61.00 1.70 n/a No Hit
RAD21_HUMAN 0.95 0.24 1.4·10-31.00 2.87 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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