rs59769368 chr20:43788152 G>C
- Sequence
aactgaaactcagtactcattaag[G/C]aatgacacttccattcccccagct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ELF1_HUMAN MTA2_HUMAN IKZF2_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | -4.45 | 4.14 | 1.00 | n/a | No Hit | |||
| MTA2_HUMAN | n/a | 2.79 | 1.50 | n/a | n/a | |||
| IKZF2_HUMAN | -2.92 | 2.33 | 1.50 | n/a | n/a | |||
| IKZF1_HUMAN | 0.70 | 2.31 | 1.50 | n/a | n/a | |||
| SRF_HUMAN | n/a | 2.49 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg