rs59822709 chr6:170160414 G>T
- Sequence
tctgtgttttgacagaagttttca[G/T]gcagcagaactcagccaaaaggat
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- GABP1_HUMAN PCH2_HUMAN GABPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABP1_HUMAN | -1.72 | 1.72 | 1.00 | n/a | n/a | |||
| PCH2_HUMAN | -3.31 | 3.17 | 1.00 | n/a | n/a | |||
| GABPA_HUMAN | -1.70 | 1.90 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pituitary, Testis, Thyroid