rs5995262 chr22:36221932 A>G
- Sequence
cgttcaggctgagagggaggggga[A/G]caacagtgaaactccccacgccga
- ASB in cell types
- HEK293 (embryonic kidney) erythroid cells CD14+ monocytes hepatocytes
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.93 | 1.01 | 1.30 | n/a | No Hit | |||
| STAG1_HUMAN | -0.38 | 0.83 | 1.04 | n/a | n/a | |||
| STAT1_HUMAN | 1.84 | -0.34 | 1.67 | -0.57 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Thyroid