rs6003916 chr22:23844636 T>C
- Sequence
ggaacccacatagcagcagctgct[T/C]gtggccggagcgcaagaacaacaa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- HTF4_HUMAN RUNX3_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HTF4_HUMAN | 1.44 | -1.10 | 1.33 | n/a | No Hit | |||
| RUNX3_HUMAN | 2.44 | n/a | 1.50 | -3.68 | Concordant | |||
| STAG1_HUMAN | 1.12 | 0.73 | 1.04 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood