rs6005221 chr22:26883786 T>C

Sequence
cgtgtttaatggaactcttgaaat[T/C]atagcctctccaaatctcctcagt
ASB in cell types
HEK293 (embryonic kidney)
ASB for transcription factors
PRDM4_HUMAN PRDM6_HUMAN ZN580_HUMAN ZN843_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PRDM4_HUMAN 2.31 n/a 4.8·10-41.00 2.00 -0.97 Weak Concordant
PRDM6_HUMAN 3.16 n/a 2.9·10-31.00 2.00 n/a No Hit
ZN580_HUMAN 3.40 n/a 3.3·10-31.00 2.00 n/a No Hit
ZN843_HUMAN 2.72 -4.72 0.011.00 1.50 n/a n/a
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Motif analysis

PRDM4_HUMAN Weak Concordant
PRDM4_HUMAN pic

Genetic associations

GRASP age at death with kuru exposure,  aortic valve calcium,  hdl cholesterol,  infant head circumference,  ldl cholesterol,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Heart_Left_Ventricle,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Thyroid

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