rs6007486 chr22:45170065 C>T
- Sequence
atagaagaaaatgctgacgtacgc[C/T]gccttccttctctgcttcagctac
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) Th1-cells
- ASB for transcription factors
- SPI1_HUMAN TBX21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.34 | -0.47 | 1.50 | -0.12 | Weak Concordant | |||
| TBX21_HUMAN | 2.36 | -2.38 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Colon_Transverse, Esophagus_Mucosa, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid