rs6010224 chr22:50276062 A>C

Sequence
gcccaggacgaggcctccccgggg[A/C]agcagctggggccttgggcacagc
ASB in cell types
GM12890 (Lymphoblastoid Cell Lines) adrenal gland spleen stomach
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.95 0.11 3.3·10-131.00 1.38 1.98 Weak Discordant
Items per page:
1 – 1 of 1

Motif analysis

CTCF_HUMAN Weak Discordant
CTCF_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Breast_Mammary_Tissue,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid,  Whole_Blood

Download