rs6012580 chr20:49009415 A>C

Sequence
aatgagtcgaggtcgctctactgc[A/C]ttccagcctgggcaacagagcaag
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
RARA_HUMAN TEAD1_HUMAN FOXK2_HUMAN SOX13_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RARA_HUMAN 2.48 -3.90 3.7·10-31.00 1.33 n/a No Hit
TEAD1_HUMAN 2.20 -4.04 0.031.00 1.50 -4.87 Concordant
FOXK2_HUMAN 2.19 -1.71 0.031.00 1.00 n/a No Hit
SOX13_HUMAN 1.70 -2.94 0.051.00 1.50 n/a No Hit
Items per page:
1 – 4 of 4

Motif analysis

TEAD1_HUMAN Concordant
TEAD1_HUMAN pic

Genetic associations

GRASP adiponectin levels,  height,  ldl cholesterol,  total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Pancreas,  Stomach,  Testis,  Thyroid,  Whole_Blood

Download