rs6012846 chr20:50120977 T>C
- Sequence
cagctcccccggttgagctggaaa[T/C]ccatgtttgccctgcatgccacta
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MS-1 (Small cell lung carcinoma) MCF7L-P(immortalized breast epithelial cell line) foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN ZN654_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.84 | 0.46 | 1.60 | n/a | No Hit | |||
| ZN654_HUMAN | 2.78 | n/a | 2.00 | n/a | n/a | |||
| RAD21_HUMAN | 1.07 | 0.69 | 1.24 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP alzheimers disease, college completion, hdl cholesterol, neuroblastoma (brain cancer), simpson-angus scale, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid