rs6014601 chr20:38291214 G>A

Sequence
tgttttcccacgacgtttcccaca[G/A]tgtgtccccgctggagtccatggc
ASB in cell types
CFPAC-1(pancreatic ductal adenocarcinoma)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.17 0.51 0.020.90 1.32 0.43 Weak Discordant
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Motif analysis

CTCF_HUMAN Weak Discordant
CTCF_HUMAN pic

Genetic associations

GRASP hdl cholesterol,  lp-pla2 activity,  transmission distortion,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Minor_Salivary_Gland,  Nerve_Tibial,  Ovary,  Pituitary,  Prostate,  Small_Intestine_Terminal_Ileum,  Stomach,  Thyroid,  Uterus,  Vagina,  Whole_Blood

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