rs6017135 chr20:43657624 C>T
- Sequence
cggagttcccctgcgccctcctga[C/T]ggtgcagtctggcggcccgtggcg
- ASB in cell types
- HEK293 (embryonic kidney) MDA-MB-453 (breast adenocarcinoma) LNCaP C4-2B (prostate carcinoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- IKZF3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF3_HUMAN | n/a | 1.71 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood