rs6018324 chr20:47181533 G>C
- Sequence
ctgggaaatgtagtccatagctga[G/C]tgattcatactgtcactcaatctg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) HAEC (human aortic endothelial cells) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- ZN143_HUMAN ATF3_HUMAN JUN_HUMAN MTG8R_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN143_HUMAN | 2.84 | -0.09 | 1.86 | n/a | No Hit | |||
| ATF3_HUMAN | 2.00 | -0.08 | 1.88 | -0.71 | Weak Concordant | |||
| JUN_HUMAN | 2.24 | 0.44 | 1.88 | -1.29 | Weak Concordant | |||
| MTG8R_HUMAN | 1.53 | n/a | 2.00 | n/a | n/a | |||
| JUND_HUMAN | 2.23 | -0.61 | 1.25 | -1.29 | Weak Concordant |
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Motif analysis
