rs6020348 chr20:50186457 G>A
- Sequence
tatactcaggcaagtttcactacc[G/A]gtcctgagcacctcccgtctccaa
- ASB in cell types
- THP-1 (acute monocytic leukemia) K562 (myelogenous leukemia) Kelly (neuroblastoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- RBM25_HUMAN C2D1A_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | 2.81 | -5.04 | 2.00 | n/a | n/a | |||
| C2D1A_HUMAN | 2.82 | n/a | 2.00 | n/a | n/a | |||
| RAD21_HUMAN | 0.89 | 0.92 | 1.09 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood