rs60240396 chr17:72632502 C>T
- Sequence
gacacagagggaggggacagaaga[C/T]gagtgtgtgttcaaagtctgcagt
- ASB in cell types
- HepG2 (hepatoblastoma) NUGC4 (Signet ring cell gastric adenocarcinoma) lower leg skin breast tumor
- ASB for transcription factors
- ETV5_HUMAN RAD51_HUMAN RARA_HUMAN FOXA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ETV5_HUMAN | n/a | 4.45 | 2.00 | n/a | No Hit | |||
| RAD51_HUMAN | n/a | 2.94 | 2.00 | n/a | n/a | |||
| RARA_HUMAN | n/a | 2.25 | 2.00 | 3.41 | Concordant | |||
| FOXA2_HUMAN | 0.06 | 2.20 | 2.25 | n/a | No Hit | |||
| TFE3_HUMAN | n/a | 3.45 | 2.00 | n/a | No Hit |
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Motif analysis
