rs6025453 chr20:57232195 T>G

Sequence
cttccccaatctacttaatccctg[T/G]gtgttcccctccccctggagatag
ASB for transcription factors
NANOG_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NANOG_HUMAN 1.78 -0.25 0.041.00 1.00 -2.81 Concordant
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Motif analysis

NANOG_HUMAN Concordant
NANOG_HUMAN pic

Genetic associations

GRASP ldl cholesterol rheumatoid arthritis
GTEx eQTL Cells_Cultured_fibroblasts Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg

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