rs60256927 chr1:6554687 G>A

Sequence
ggctccacggaggactccatttac[G/A]ttacgcaaattccctaccccagcc
ASB in cell types
K562 (myelogenous leukemia) MCF7L-P(immortalized breast epithelial cell line)
ASB for transcription factors
ZNF24_HUMAN MNT_HUMAN HDAC2_HUMAN RFOX2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZNF24_HUMAN 1.81 -0.59 6.1·10-41.00 1.00 n/a No Hit
MNT_HUMAN 1.99 -0.03 4.9·10-31.00 1.25 n/a No Hit
HDAC2_HUMAN 2.16 -1.65 5.4·10-31.00 1.00 n/a n/a
RFOX2_HUMAN 1.93 -1.71 7.7·10-31.00 1.17 n/a n/a
HNRLL_HUMAN 2.72 -4.79 9.0·10-31.00 1.50 n/a n/a
Items per page:
1 – 5 of 10

Motif analysis

GMEB1_HUMAN Weak Discordant
GMEB1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Lung,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

Download