rs6026673 chr20:59074731 G>A

Sequence
caaattactagtgaccaggctatc[G/A]atcatttaaacaagcaatgctatc
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
MTG16_HUMAN KDM1A_HUMAN MTG8R_HUMAN ARI1B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MTG16_HUMAN n/a 3.36 1.001.2·10-6 2.00 n/a n/a
KDM1A_HUMAN n/a 2.78 1.001.2·10-5 2.00 n/a n/a
MTG8R_HUMAN n/a 3.44 1.005.5·10-4 2.00 n/a n/a
ARI1B_HUMAN -2.32 3.11 1.008.7·10-3 2.00 n/a n/a
ATF3_HUMAN -4.62 2.02 1.000.02 2.00 -0.87 Weak Discordant
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Motif analysis

ATF3_HUMAN Weak Discordant
ATF3_HUMAN pic

Genetic associations

GTEx eQTL Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg

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