rs6029588 chr20:41249980 A>G
- Sequence
atgggagttctgccgacaatacca[A/G]gccagctggaagcaccaacaaggg
- ASB in cell types
- GM18526 (B – cells Lymphoblastoid Cell Lines) IPSC-derived bipolar neuron bipolar neuron K562 (myelogenous leukemia)
- ASB for transcription factors
- ESR1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | -0.44 | 2.27 | 2.00 | 3.85 | Concordant |
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Motif analysis
Genetic associations
GRASP adiponectin levels, body mass index (bmi), infant head circumference, ldl cholesterol, mitral annular calcium, total cholesterol, triglycerides, waist hip ratio
GTEx eQTL Artery_Aorta, Artery_Tibial, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Pancreas, Pituitary, Thyroid