rs6033858 chr20:1467025 C>T
- Sequence
cgccgctccgcgccctctggcgac[C/T]gcggcgcgaaccgcagcctaacgg
- ASB in cell types
- HCASMC (Human coronary artery smooth muscle cells) adult erythroblasts CD14+ monocytes breast tumor
- ASB for transcription factors
- TCF21_HUMAN NR2C1_HUMAN ESR1_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | 1.94 | n/a | 2.00 | n/a | No Hit | |||
| NR2C1_HUMAN | 2.56 | -2.18 | 1.00 | 0.14 | Weak Discordant | |||
| ESR1_HUMAN | 2.16 | -0.01 | 1.67 | n/a | No Hit | |||
| STAT1_HUMAN | 1.77 | 0.76 | 2.33 | n/a | No Hit | |||
| HCFC1_HUMAN | 2.40 | -1.43 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellum, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Spleen, Stomach, Thyroid, Whole_Blood