rs6038619 chr20:6845415 C>A
- Sequence
ttgtcccatcctatccaccagacc[C/A]tgcaagcaaagaaatgtaaagtca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- COT1_HUMAN BHE40_HUMAN IKZF2_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | -2.18 | 2.56 | 1.00 | n/a | No Hit | |||
| BHE40_HUMAN | -2.52 | 2.62 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | -0.10 | 1.84 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | -0.10 | 1.72 | 1.17 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), chronic kidney disease, fasting insulin, hdl cholesterol, homa-b, homa-ir, transmission distortion