rs6040429 chr20:11207958 C>T
- Sequence
ttcggatatccagtggagtgaatg[C/T]ggcattcattaatgcccaatgtcg
- ASB in cell types
- HepG2 (hepatoblastoma) BIN-67 (Ovarian small cell carcinoma, hypercalcemic type) GBM39 (Human brain tumor) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ZNF24_HUMAN SMC3_HUMAN TEAD3_HUMAN SSXT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZNF24_HUMAN | 1.88 | -1.69 | 1.00 | -0.67 | Weak Concordant | |||
| SMC3_HUMAN | 2.41 | -1.36 | 2.00 | n/a | n/a | |||
| TEAD3_HUMAN | 2.15 | -1.86 | 1.00 | n/a | No Hit | |||
| SSXT_HUMAN | -1.16 | 2.06 | 1.50 | n/a | n/a | |||
| SMRC1_HUMAN | -4.10 | 2.30 | 1.50 | n/a | n/a |
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Motif analysis
