rs6042462 chr20:1467832 C>T

Sequence
actcacatctgttcccttggatac[C/T]ctcgctacaattgccattcccgcg
ASB in cell types
SKH1 (chronic myelogenous leukemia, BCR-ABL1 positive)
ASB for transcription factors
EGR1_HUMAN SPI1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EGR1_HUMAN n/a 2.58 1.005.9·10-3 2.00 n/a No Hit
SPI1_HUMAN 1.61 0.11 0.051.00 2.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy),  fasting insulin,  height,  homa-b,  homa-ir
GTEx eQTL Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Thyroid,  Whole_Blood

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